UPDATE! Thanks to GI.Suicide, grunt 4 mvp, kurt_eh, and especially latinjoe22 for helping me reduce the list.
Figures/Weapons (NOTE: At this point I'm likely to buy a complete figure to get the weapons/parts I want not including filecards)
Snake Eyes/Steeler: gun (black)
Snake Eyes: Explosives pack (black)
Airborne: arm with logo
Duke: right arm (original cuffs, not discoloured)
Spirit: back (not discoloured)
Deep Six: figure/bellows/hose
Thunder: monocular
Cutter: Both arms (not discoloured)
Heavy Metal: mic/gun
Snake Eyes V2: sword (nice handle)
Tripwire v2: figure/backpack/mines/mine detector
Jinx: figure/2 swords
Tunnel Rat: flashlight/bag(?)
TF Dusty: bipod
TF Bazooka: backpack
Sgt. S Marauders Lowlight: complete
Filecards:
Torpedo: filecard
Viper Pilot: filecard
Buzzer: filecard (peach)
Ripper: filecard (peach)
Tele-Vipers: filecard (peach)
Tomax/Xamot: filecard (peach)
Blueprints:
VAMP
Stinger
Mountain Howitzer
Missile Defence
AWE Striker
Armadillo
Bridge Layer
Moray
Parachute
Checkpoint Alpha
Night Raven
Terror Drome
Tomahawk
Surveillance Port
Outpost Defender
Tiger Fly
Tiger Sting
Sky Havoc
Sky Shark
Sky Patrol Sky Hawk
Sky Raven
Vehicles/Parts:
MMS: missile, missle mount
Fang: Red roll cage
Falcon Glider: complete
HQ Command Centre: flag
Skystriker: canopy
Viper glider: complete
Rattler: Rear canopy
MANTA: gun
USS Flagg: 2 ladders with railings, 2 missiles, one deck gun, admiral's launch, blast shield silver mount, 2 anchors, main superstructure, 1 deck clip, purge valve
Moray: Rear machine gun, torpedo (right side with decal)
Battle platform: windscreen
C.A.T. (crimson guard tank): complete
Terror Drome: complete
Firebat: one small missile
Missile Defense: Complete
Machine Gun Defense: Complete
Forward Observer: Complete
Ammo Dump: Complete
LAW: Complete
Parts to complete spare:
Slugger: Machine gun
Snow Cat: wiper, unbroken missile rack
Weapon transport: steering wheel
Night landing: knife
Conquest: 2 x grey missile cap
LCV: 1 x wind shield, 2 x scope
Thunder machine: 1 x rear fender
Check Point Alpha: antenna
Mortar Defense: green footstands
Rifle Range: blue footstands, bayonet rifle
Sky Patrol Sky Hawk: Tail fin